2024 Mergebambyfactor

Mergebambyfactor

Author: vnxr

August undefined, 2024

WebThe mergeBamByFactor function merges BAM files based on grouping information specified by a factor, here the Factor column of the imported targets file. It also returns an updated targets object containing the paths to the merged BAM files as well as to any unmerged files without replicates. WebOutput from the createParamFiles function. position string, one of baseCommand, inputs, outputs to view or apply a modification. index numeric or character vector, index to view …

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Web4 jun. 2024 · mergeBamByFactor: Merge BAM files based on factor; moduleload: Interface to allow full use of the Environment Modules system... olBarplot: Bar plot for intersect … Web5 mei 2024 · mergeBamByFactor 函数根据 Factor 指定的分组信息合并 BAM 文件，此处为导入目标文件的 Factor 列。它还返回一个更新的 SYSargs 对象，该对象包含合并的 BAM 文件的路径以及没有重复的任何未合并的文件。如果不需要合并 BAM 文件，则可以跳过此步骤。 boucher road sports shops

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WebGenerates targets file with sample-wise reference as required for some NGS applications, such as ChIP-Seq containing input samples. The reference sample information needs to be provided in the input file in a column called SampleReference where the values reference the labels used in the SampleName column. Sample rows without reference … Web.github/reference_hash .github/reference_hash/spr spr ; public . public/404.html 404.html ; about . acknowledgement . public/about/acknowledgement/index.html index ... Web# # pre code {# # white-space: pre !important; # # overflow-x: scroll !important; # # word-break: keep-all !important; # # word-wrap: initial !important ... boucher road opening hours

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Mergebambyfactor

Web30 sep. 2024 · Background: Adipose tissue (AT) dysfunction is involved in obesity-related comorbidities. Epigenetic alterations have been recently associated with AT deterioration in obesity conditions. In this work, we profiled the H3K4me3 histone mark in human AT, with special emphasis on the changes in the pattern of histone modification in obesity and … Web14 feb. 2024 · The mergeBamByFactor function merges BAM files based on grouping information specified by a factor, here the Factor column of the imported targets file. It …

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WebmergeBamByFactor.Rd Raw Blame Patch Log History \name{mergeBamByFactor} \alias{mergeBamByFactor} \title{ Merge BAM files based on factor } \description{ … WebThe functionality provided by \code{mergeBamByFactor} is useful for experiments where pooling of replicates is advantageous to maximize the depth of read coverage, such as …

Weblzhan140 authored on 23/05/2024 23:25:09 Showing1 changed files man/mergeBamByFactor.Rd. History View file @4fc356ee2 WebAll rows of merged parent samples are removed. The functionality provided by mergeBamByFactor is useful for experiments where pooling of replicates is …

Web11 aug. 2016 · The mergeBamByFactor function merges BAM files based on grouping information specified by a factor, here the Factor column of the imported targets file. It … Web- added writeTargetsRef and mergeBamByFactor: version 1.3.17 - 1.3.10 - Converted main vignette to R Markdown - Instructions to download sample data via systemPipeRdata - Fix for missing systemPipeRdata on build system - Fix to get correct name of HTML page on Bioc page: version 1.3.16 - Fixed minor bug in runCommandline: version 1.3.14 - 1.3.15

Webcoverage. The `mergeBamByFactor` function merges BAM files based on grouping information: specified by a `factor`, here the `Factor` column of the imported targets file. It also returns an updated `targets` object containing the paths to the: merged BAM files as well as to any unmerged files without replicates. hayward phoenix rebuild kitWeblzhan140 authored on 23/05/2024 23:25:09 Showing1 changed files man/mergeBamByFactor.Rd. History View file @4fc356ee2 hayward phoenix partsWeb7 aug. 2024 · Package ‘systemPipeR’ October 9, 2015 Type Package Title systemPipeR: NGS workflow and report generation environment Version 1.2.23 Date 2015-20-08 Author Thomas Girke… hayward phoenix pool vacuum tiresWeb- Added a new argument to mergeBamByFactor function: version 2.1.15 - varseq functions argument deprecated - Added SE Replacement method (SYSargsList) - writeTargetsout … hayward phone noWebmergeBamByFactor <-function (args, mergefactor = " Factor ", overwrite = FALSE, silent = FALSE, ...) {if (all(class(args) != " SYSargs " & class(args) != " SYSargs2 ")) stop(" … boucher romagnatWebsystemPipeR: NGS workflow and report generation environment boucher road swimming poolhttp://dk.archive.ubuntu.com/bioconductor-releases/3.9/bioc/manuals/systemPipeR/man/systemPipeR.pdf boucher romillé